User Documentation

pharus is a generic REST API server backend for DataJoint pipelines built on top of flask, datajoint, and pyjwt.

Installation

If you have not done so already, please install the following dependencies.

Prerequisites

Download the docker-compose-deploy.yaml docker environment from the source located here.

Running the API server

To start the API server, use the command:

PHARUS_VERSION=0.1.0 docker-compose -f docker-compose-deploy.yaml up -d

To stop the API server, use the command:

PHARUS_VERSION=0.1.0 docker-compose -f docker-compose-deploy.yaml down

References