Tutorials

• DataJoint Elements are modular pipelines that can be connected into a complete workflow. Workflow Optogenetics is an example that combines four DataJoint Elements - Lab, Animal, Session, and Optogenetics.

• Workflow Optogenetics includes an interactive tutorial on GitHub Codespaces, which is configured for users to run the pipeline.

• In the interactive tutorial, the example notebook describes the pipeline and provides instructions for adding data to the pipeline.

Installation Instructions for Active Projects

• The Workflow Optogenetics described above can be modified for a user's specific experimental requirements and thereby used in active projects.

• The GitHub Codespace and Dev Container is configured for tutorials and prototyping.
  We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the User Guide page.